BLASTP 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Q15555 RP1. Southeast Collaboratory of Structural Genomics (327 letters) Database: pdb 31,355 sequences; 6,417,145 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q15691 unk Southeast Collaboratory of Structural Genomics 290 2e-79 1wyo_A mol:protein length:159 Microtubule-associated protein RP... 266 4e-72 hss001000902.1 unk RSGI 262 9e-71 1vka_A mol:protein length:153 Microtubule-associated protein RP... 233 4e-62 1pa7_A mol:protein length:130 Microtubule-associated protein RP... 227 3e-60 1v5k_A mol:protein length:115 microtubule-associated protein, R... 178 1e-45 mmt007009322.1 unk RSGI 176 5e-45 1yig_A mol:protein length:76 Microtubule-associated protein RP/... 77 7e-15 1yib_A mol:protein length:76 Microtubule-associated protein RP/... 75 2e-14 1txq_B mol:protein length:86 Microtubule-associated protein RP/... 75 2e-14 1wu9_A mol:protein length:80 Microtubule-associated protein RP/... 75 3e-14 >Q15691 unk Southeast Collaboratory of Structural Genomics Length = 268 Score = 290 bits (743), Expect = 2e-79 Identities = 143/255 (56%), Positives = 177/255 (69%), Gaps = 8/255 (3%) Query: 44 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 103 MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKK Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60 Query: 104 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 163 VKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYD Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120 Query: 164 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANXXXXXXXXXXXXXXXXXXXXXXXX 223 GK+YDPV ARQGQ+ P N PKK ++ Sbjct: 121 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVV 180 Query: 224 XXXXXXXXXXXXXDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHG 283 + + +L +QV+ LKL +E +EKERDFYFGKLR IEL+CQE+ Sbjct: 181 RKNPGVGNG--------DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENE 232 Query: 284 QENDDLVQRLMDILY 298 END ++QR++DILY Sbjct: 233 GENDPVLQRIVDILY 247 >1wyo_A mol:protein length:159 Microtubule-associated protein RP/EB family m Length = 159 Score = 266 bits (681), Expect = 4e-72 Identities = 120/154 (77%), Positives = 141/154 (91%) Query: 39 SYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGC 98 S S GMAVNVYSTS+T E +SRHD++AWVND + LNYTK+EQLCSGAAYCQFMDMLFPGC Sbjct: 3 SGSSGMAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGC 62 Query: 99 ISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFY 158 + L+KVKFQAKLEHEYIHNFK+LQA+FK+M VDK+IPVEKLVKG+FQDN +FIQWFKKF+ Sbjct: 63 VHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFF 122 Query: 159 DANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLP 192 DANYDGK+Y+P+ ARQGQD PPP+PG+QIF+ P Sbjct: 123 DANYDGKDYNPLLARQGQDVAPPPNPGDQIFSGP 156 >hss001000902.1 unk RSGI Length = 146 Score = 262 bits (669), Expect = 9e-71 Identities = 116/146 (79%), Positives = 136/146 (93%) Query: 44 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 103 MAVNVYSTS+T E +SRHD++AWVND + LNYTK+EQLCSGAAYCQFMDMLFPGC+ L+K Sbjct: 1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60 Query: 104 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 163 VKFQAKLEHEYIHNFK+LQA+FK+M VDK+IPVEKLVKG+FQDN +FIQWFKKF+DANYD Sbjct: 61 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD 120 Query: 164 GKEYDPVEARQGQDAIPPPDPGEQIF 189 GK+Y+P+ ARQGQD PPP+PG+QIF Sbjct: 121 GKDYNPLLARQGQDVAPPPNPGDQIF 146 >1vka_A mol:protein length:153 Microtubule-associated protein RP/EB family m Length = 153 Score = 233 bits (594), Expect = 4e-62 Identities = 104/138 (75%), Positives = 123/138 (89%) Query: 45 AVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKV 104 AVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKKV Sbjct: 15 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 74 Query: 105 KFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDG 164 KFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYDG Sbjct: 75 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 134 Query: 165 KEYDPVEARQGQDAIPPP 182 K+YDPV ARQGQ+ P Sbjct: 135 KDYDPVAARQGQETAVAP 152 >1pa7_A mol:protein length:130 Microtubule-associated protein RP/EB family m Length = 130 Score = 227 bits (578), Expect = 3e-60 Identities = 101/130 (77%), Positives = 119/130 (91%) Query: 44 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 103 MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKK Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60 Query: 104 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 163 VKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYD Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120 Query: 164 GKEYDPVEAR 173 GK+YDPV AR Sbjct: 121 GKDYDPVAAR 130 >1v5k_A mol:protein length:115 microtubule-associated protein, RP/EB family, Length = 115 Score = 178 bits (452), Expect = 1e-45 Identities = 78/101 (77%), Positives = 93/101 (92%) Query: 60 RHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFK 119 RHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKKVKFQAKLEHEYI NFK Sbjct: 10 RHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFK 69 Query: 120 LLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDA 160 +LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+D+ Sbjct: 70 ILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDS 110 >mmt007009322.1 unk RSGI Length = 102 Score = 176 bits (447), Expect = 5e-45 Identities = 77/100 (77%), Positives = 92/100 (92%) Query: 60 RHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFK 119 RHD++AW+N+ + LN TK++QLCSGAAYCQFMDMLFPG I+LKKVKFQAKLEHEYI NFK Sbjct: 3 RHDMLAWINESLQLNLTKIKQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFK 62 Query: 120 LLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYD 159 +LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+D Sbjct: 63 ILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFD 102 >1yig_A mol:protein length:76 Microtubule-associated protein RP/EB family m Length = 76 Score = 76.6 bits (187), Expect = 7e-15 Identities = 35/58 (60%), Positives = 47/58 (81%) Query: 241 ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILY 298 + + +L +QV+ LKL +E +EKERDFYFGKLR IEL+CQE+ END ++QR+MDILY Sbjct: 11 DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIMDILY 68 >1yib_A mol:protein length:76 Microtubule-associated protein RP/EB family m Length = 76 Score = 75.1 bits (183), Expect = 2e-14 Identities = 34/58 (58%), Positives = 47/58 (81%) Query: 241 ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILY 298 + + +L +QV+ LKL +E +EKERDFYFGKLR IEL+CQE+ END ++QR++DILY Sbjct: 11 DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILY 68 >1txq_B mol:protein length:86 Microtubule-associated protein RP/EB family m Length = 86 Score = 75.1 bits (183), Expect = 2e-14 Identities = 34/58 (58%), Positives = 47/58 (81%) Query: 241 ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILY 298 + + +L +QV+ LKL +E +EKERDFYFGKLR IEL+CQE+ END ++QR++DILY Sbjct: 8 DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILY 65 >1wu9_A mol:protein length:80 Microtubule-associated protein RP/EB family m Length = 80 Score = 74.7 bits (182), Expect = 3e-14 Identities = 34/56 (60%), Positives = 46/56 (82%) Query: 243 QVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILY 298 + +L +QV+ LKL +E +EKERDFYFGKLR IEL+CQE+ END ++QR++DILY Sbjct: 4 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILY 59 Database: pdb Posted date: Jul 13, 2006 10:28 PM Number of letters in database: 6,417,145 Number of sequences in database: 31,355 Lambda K H 0.319 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,656,589 Number of Sequences: 31355 Number of extensions: 143062 Number of successful extensions: 289 Number of sequences better than 1.0e-03: 11 Number of HSP's better than 0.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 277 Number of HSP's gapped (non-prelim): 12 length of query: 327 length of database: 6,417,145 effective HSP length: 93 effective length of query: 234 effective length of database: 3,501,130 effective search space: 819264420 effective search space used: 819264420 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits)